Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDTMILNDNHKIPTLGLGTWMINN-DRVAQVVKDAIELGYRHINTAQAYNNEKGVGVGIKESGITRESLFVTTKIAAEHKNYESATKSIDQSLEALGLDCIDLMIIHSPQPW---KEWRETDKHFDQGNL
1VBJ Chain:A ((9-138))
-TQSLKLSNGVMMPVLGFGMWKLQDGNEAETATMWAIKSGYRHIDTAAIYKNEESAGRAIASCGVPREELFVTTKLWNSDQGYESTLSAFEKSIKKLGLEYVDLYLIHWPGKDKFIDTWKAFEKLYADKKV
General information:
TITO was launched using:
RESULT:
Template:
1VBJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23953 for 919 contacts (-26.1/contact) +
2D Compatibility (PS) -13435 + (NN) -3118 + (LL) 208
1D Compatibility (HY) -8800 + (ID) 2200
Total energy: -51298.0 ( -55.82 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_1VBJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VBJ-query.scw
PDB file :
Tito_Scwrl_1VBJ.pdb
: