Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKRRKFSSVVAAVLIFALIFSLFSPGTKAAAAGAIDQAAALENGKEQTGAMKEPEQVKWYKVTPGATDIQKNSHMALTVKSDSVLNVSVYPSKEKALKDETFEMYRSFTAEDGKSEVIFPYAWSGPYYVKVEYLGEEEPEDGGTAEAAAEAKYTIGYKGTKKQPSDLEEEEACPVEMSVDQKKSGKGILDKLRSIRDEQLSQTAEGKELTSLYYKAAPFIVAKLALNKTARNEIYQDLVTLKPLFDDVSENGASSSYKVTEKDQKAINRLYDKALQSVPSFLKEEIKKQADRLNMKQLQGKTAGAILTENNIAAKSEVQTTKVIFKVKDNKSLSSVHNEMKGFSASAQSKKDISNVKKAKKLFDNLYSFELPKDEKQNGAYTASAKRVKSAAATLSKMSNVEFAEPVQEYKSLA------ND-------------------IQYPYQWPLKNNGENGGVKNADVKYE-PANTLLSKRKLNDTLIAVVDTGVDSTLADLKGKVRTDLGHNFV--G---RNNNAMDDQGHGTHVAGIIAAQSDNGYSMTGLNAKAKIIPVKVLDSA------GSGDTEQIALGIKYAADKGAKVINLSLGGG-YSRVLEFALKYAADKNVLIAAASGNDGEN-ALSYPASSKYVMSVGATNRMD---MTADFSNYGKGLDISAPGSDIPSLVPN------------------GNVTYMSGTSMATPYAAAAAGLLFAQNPKLKRTEVEDMLKKTADDISFESVDGGEEELYDDYGDPIEIPKTPGVDWHSGYGRLNVMKAVSAADLQLKVNKLESTQTAVRGSAKEGTLIEVMNGKKKLGSAKAGKDNAFKVNIATQKQDQVLYLKATKGDAKTSYKVVVVKGKPSGTPKVNAVKTKDTAVKGKANSKAMIRVKNKSKKVIASAKADAKGTFSVKIKKQKAGTVLYVTAVDTDKKESKEAKVVVEK
1R6V Chain:A ((28-440))----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EYTEGKILVGYNDRSEVDKI---VKA-----VNGKVVLELP-----QIKVVSIKLNGMT---------VKQAYDKIKALA-LKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEA-----------IGVTQQLWEE---ASGTNIIVAVVDTGVDGTHPDLEGQVIA--GYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKK-DGKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG-----------------------NGWDHDTGYGLVKLDAALQGP------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1R6V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2398 -178994 -74.64 -507.06
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -74.64
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.471

(partial model without unconserved sides chains):
PDB file : Tito_1R6V.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1R6V-query.scw
PDB file : Tito_Scwrl_1R6V.pdb: