Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTQFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVMSKQMRFDNS-EVPILTTKKVAWKTAIKELLWIWQLKSNDVNDLNKMGVHIWDQWKQ------------EDGTIGHAYGFQLGKKNRSL-------NGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDDLDAMSLTPCVYETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPELWINPEVKDFYNFTIDDFKLINYKHGDKLLFEVAV
1J3K Chain:C ((42-328))-YHPEYQYLNIIYDIMMNGNKQS--DRT-GV-----G--VLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGET-NGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA


General information:
TITO was launched using:
RESULT:

Template: 1J3K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1287 -13222 -10.27 -49.52
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain C : 0.76

3D Compatibility (PKB) : -10.27
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.510

(partial model without unconserved sides chains):
PDB file : Tito_1J3K.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1J3K-query.scw
PDB file : Tito_Scwrl_1J3K.pdb: