Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS
2B71 Chain:A ((34-191))
---------GHTERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCE---------------MGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSK--NMTCIENIASVQTTATNKPIFDLKILRTST-
General information:
TITO was launched using:
RESULT:
Template:
2B71.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73616 for 1210 contacts (-60.8/contact) +
2D Compatibility (PS) -16540 + (NN) -12340 + (LL) 240
1D Compatibility (HY) -11600 + (ID) 3300
Total energy: -117156.0 ( -96.82 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_2B71.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B71-query.scw
PDB file :
Tito_Scwrl_2B71.pdb
: