Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRILAVHASPRGER-SQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGEESGGRSFEDSCDEAEQRLLALARSA
1T5B Chain:A ((1-200))
MSKVLVLKSSILA-GYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMR---DAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEK-G---PEGLVTGKRAVVLSSRGG-IHKDT----PTDLIAPYLKVFLGFIGITDVNFVFAEGIAYGPEVAAKAQADAKAAIDSVVAA-
General information:
TITO was launched using:
RESULT:
Template:
1T5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117529 for 1529 contacts (-76.9/contact) +
2D Compatibility (PS) -22005 + (NN) -14281 + (LL) 492
1D Compatibility (HY) -14400 + (ID) 3400
Total energy: -171123.0 ( -111.92 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_1T5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T5B-query.scw
PDB file :
Tito_Scwrl_1T5B.pdb
: