Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLTGKRALIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLRGRVEEFASGWGSRPELCFPCDVADDSQIEAVFAALGKHWDGLDIIVHSVGFAPGDQLDGDFTAVTTREGFRIAHDISAYSFIALAKAGREMMKGRNGSLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGAEGTRVNAVSAGPIRTLAASGIKSFRKMLAANERQTPLRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGPLDDD
3OJF Chain:D ((2-253))
-ELLQGKTFVVMGVANQRSIAWGIARSLHNAGAKLIFTYAGERLERNVRELADTLEGQESLVLPCDVTNDEELTACFETIKQEVGTIHGVAHCIAFANRDDLKGEFVD-TSRDGFLLAQNISAFSLTAVAREAKKVMT-EGGNILTLTYLGGERVVKNYNVMGVAKASLEASVKYLANDLGQHGIRVNAISAGPIRTLSAKGVGDFNSILREIEERAPLRRTTTQEEVGDTAVFLFSDLARGVTGENIHVDSGYHILGL------
General information:
TITO was launched using:
RESULT:
Template:
3OJF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185723 for 2170 contacts (-85.6/contact) +
2D Compatibility (PS) -27820 + (NN) -12819 + (LL) 372
1D Compatibility (HY) -26000 + (ID) 5850
Total energy: -257840.0 ( -118.82 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_3OJF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OJF-query.scw
PDB file :
Tito_Scwrl_3OJF.pdb
: