Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHRSPLAWLRLLLAAVLGAFLLGGPLHAAETAATRSPAWAQAVDPSINLYRMSPTLYRSALPNAQSVALLQRLQVKTVVSFIKDDDRAWLGQAPVRVLSLPTHADRVDD--AEVLSVLRQLQAA-EREGPVLMHCKHGNNRTGLFAAMYRIVVQGWDKQAALEEMQHGGFGDEDDMRDASAYVRGADVDGLRLAMANGECSPSRFAVCHVREWMAQALDRP
2NT2 Chain:A ((3-139))
-----------------------------------------------SPTQIFEHVFLGSEWNASNLEDLQNRGVRYILNVTREIDNF--FPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKPNP-SFMRQLEEYQ----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2NT2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61670 for 1122 contacts (-55.0/contact) +
2D Compatibility (PS) -15139 + (NN) -14343 + (LL) 6820
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -87232.0 ( -77.75 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_2NT2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NT2-query.scw
PDB file :
Tito_Scwrl_2NT2.pdb
: