Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MDDGSVSDIKR----------------GRAARNAKLASIPVGFAGRAALGLGKRLTG-KSKDEVTAELMEKAANQLFTVLGELKGGAMKVGQALSVMEAAIPDEFGEPYREALTKLQKDAPPLPASKVHRVLDGQLGTKWRERFSSFNDTPVASASIGQVHKAIWSDGREVAVKIQYPGADEALRADLKTMQRMVGVLKQLSPGADVQGVVDELVERTEMELDYRLEAANQRAFAKAYHDHPRFQVPHVVASAPKVVIQEWIEGVPMAEIIRHGTTEQRDLIGTLLAELTFDAPRRLGLMHGDAHPGNFMLLPDGRMGIIDFGAVAPMPGGFPIELGMTIRLAREKNYDLLLPTMEKAGLIQRGRQVSVREIDEMLRQYVEPIQVEVFHYTRKWLQKMTVSQIDRSVAQIRTARQMDLPAKLAIPMRVIASVGAILCQLDAHVPIKALSEELIPGFAEPDAIVV |
| 4O6D Chain:A ((19-377)) | LYFQSNADTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVSRLEHQMWEAVKDELNTLLKEN-------GVDLSVVV----EKQEGMYKSAPKRLTATANN------TFVVDGPETKECPTQNRAWNSLEVEDFGFGL-------TSTRMFLKVRESNTTECDSKIIGTAVK------------------NNLAIHSD--LSYWIESRL----------NDTWKLERAVLGEVKSC--TWPETHTLWG---DGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGP-----WDEGRVEI-DFDY-CP---------GTTVTLS------------ESCG--HRGP------------------------ATR------TTTESGKLITDWCC-RSCTLP-----PLRYQTDSG---CWYGMEIRPQRHDEKTLVQSQVNA---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4O6D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 13725 for 2477 contacts (5.5/contact) +
2D Compatibility (PS) -32286 + (NN) -4286 + (LL) 12888
1D Compatibility (HY) -8000 + (ID) 3700
Total energy: -21659.0 ( -8.74 by residue)
QMean score : 0.216
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