Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYDVIISGGGLLGLITAVGLSNNS--VSVAVIEKNNLPRIIDDNRAFAISQGS-RKILEKLGIWQFIESE-AEPILDICILDENSPITVHYNHKMVSEEPMGYVINSTVIWNAINNNFLNKLNIYSL--HSYRTITCDAGYVEVTLGNNQKLISSLLICAEGKNSKLPGLFSMSIIKFDYKQ--SSIVFNVKHELHHQNLAVEQFF-PGGP--FAILPMKSGYTSSIVWTEKSEISK---MLMNLSEEEFIIELKKRFGSYLGEVKLD-GERKSYPLSFA-SAKKLYKSRVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSNRIFCAKTLRNFGLMAVENSKFLKKRFIRHAMGFV |
| 3C4A Chain:A ((1-329)) | --MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE--QEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN-EP-S-LM----STGVLLCGVERRGLVHALRDKCRSQ-GIAIRFESPLLEHG-----------ELPLADYDLVVLANGVNHKTAHFTEALVPQVDYGRNKYIWYGTSQL--FD-QMNLVFRTHGKDIFIAHAYKYSD-T-MSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGHGLVSQPGLGWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTE----DGV--PAALKRFEERALPLVQLFRGHADNSRVWFETVEEREFVQSFDARRKSLPPMPEALAQNLRYAL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C4A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135495 for 2593 contacts (-52.3/contact) +
2D Compatibility (PS) -32807 + (NN) -1406 + (LL) 2064
1D Compatibility (HY) -6000 + (ID) 2550
Total energy: -176194.0 ( -67.95 by residue)
QMean score : 0.345
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