Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFTLPELPYDKTALEP-YISAKTLDFHYDKHHKGYLNKLNELIENTDYQNVKIEELIMKVHGNSDEVPVFNNAAQVWNHTFYWNSMKKSGGDKPKEDGLLAKKIQDDIGGFDKFHEEFFNHGIGQFGSGWVWLVLERGKLKITKTPNADLPLIYDQVPLLTMDVWEHAYYLDCQNRRIDYIKIFLDH-LINWDFAEENLKKNT
1MY6 Chain:A ((1-198))
-AFVQEPLPFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTYGDAAKVGIFNNAAQVWNHTFFWNSLKPGGGGVPT--GDVAARINSAFGSYDEFKAQFKNAAATQFGSGWAWLVLEAGTLKVTKTANAENPLVHGQVPLLTIDVWEHAYYLDYQNRRPDFIDNFL-NQLVNWDFVAKNLAA--
General information:
TITO was launched using:
RESULT:
Template:
1MY6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121105 for 1579 contacts (-76.7/contact) +
2D Compatibility (PS) -20694 + (NN) -8743 + (LL) 132
1D Compatibility (HY) -18400 + (ID) 5450
Total energy: -174260.0 ( -110.36 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_1MY6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MY6-query.scw
PDB file :
Tito_Scwrl_1MY6.pdb
: