Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQFFLPKNSKINKKGKVYPAPTKAKNVRRFQIYRWSAD-DKKNPRVDTFFIDMDNCGSMVLDALIKIKDEIDPTLTFRRSCREGICGSCAMNIDGTNTLACTKSIPDI-KGDVKIYPLPHMYVIKDLVSDLSQFYEQYKSVNPWLQADKPN-LLNQEYSQSPEDRKKLDGLSDCILCACCSTGCPNYWWNNDKFLGPAILLQAYRWIADSRDNKTDERLDALNDPFKLYRCHTIMSCTKTCPKGLNPAKAIAKIKQLMVERKGF
2H88 Chain:B ((8-246))
------------------------TSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYK--
General information:
TITO was launched using:
RESULT:
Template:
2H88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129171 for 1768 contacts (-73.1/contact) +
2D Compatibility (PS) -25386 + (NN) -13322 + (LL) 1208
1D Compatibility (HY) -29600 + (ID) 7700
Total energy: -203971.0 ( -115.37 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_2H88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H88-query.scw
PDB file :
Tito_Scwrl_2H88.pdb
: