Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNA-FNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGP-QDKPLHDVVIESIDVEE
1ZKC Chain:A ((17-175))
------------RGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCA----------------------------YLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFV
General information:
TITO was launched using:
RESULT:
Template:
1ZKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60603 for 1231 contacts (-49.2/contact) +
2D Compatibility (PS) -16590 + (NN) -5694 + (LL) 1312
1D Compatibility (HY) -7600 + (ID) 3750
Total energy: -92925.0 ( -75.49 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_1ZKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZKC-query.scw
PDB file :
Tito_Scwrl_1ZKC.pdb
: