Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIAKTAIISPKAEIGKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFIGKNTEIFPFAVLGTQPQDLKYKGEYSELMVGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGLNRHRMRQLLESKDIDFIHALYKRLFRPIPSLRES-AKLELEEHANNPFVKEICSFILESSRGVAYKSSEYSSEEKQEE
1J2Z Chain:A ((2-260))
-SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGLNRHRMRQLLESKDIDFIYALYKRLFRPIPSLRESAKLELEE-HANNPFVKEICSFILESSRGVAYKSS----------
General information:
TITO was launched using:
RESULT:
Template:
1J2Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -231348 for 2220 contacts (-104.2/contact) +
2D Compatibility (PS) -27971 + (NN) -5135 + (LL) 1052
1D Compatibility (HY) -36800 + (ID) 12400
Total energy: -312602.0 ( -140.81 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1J2Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J2Z-query.scw
PDB file :
Tito_Scwrl_1J2Z.pdb
: