Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKN-PMFSLDERLKMMQLATKSFKNVECVAFEGLLADLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPFISKV
1OD6 Chain:A ((1-156))
--MHVVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLEN----QYLFSAEERLAIIREATAHLANVEAATFSGLLVDFVRRVGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKAK
General information:
TITO was launched using:
RESULT:
Template:
1OD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125786 for 1186 contacts (-106.1/contact) +
2D Compatibility (PS) -16229 + (NN) -4656 + (LL) 428
1D Compatibility (HY) -13200 + (ID) 3300
Total energy: -162743.0 ( -137.22 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_1OD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OD6-query.scw
PDB file :
Tito_Scwrl_1OD6.pdb
: