Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MVKEITDATFEQE----TSEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEA--LKIVKMDVDE-NPETPGSFGV-MSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV-
2TRX Chain:A ((1-108))
SDKIIHL-TDDSFDTDVLKAD-GAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNID-QNPGTAPKYGIR-GIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA
General information:
TITO was launched using:
RESULT:
Template:
2TRX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61142 for 674 contacts (-90.7/contact) +
2D Compatibility (PS) -10466 + (NN) -2958 + (LL) 716
1D Compatibility (HY) -8800 + (ID) 1950
Total energy: -84600.0 ( -125.52 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_2TRX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TRX-query.scw
PDB file :
Tito_Scwrl_2TRX.pdb
: