Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNNLKLSEEIKRAINELGYTEATPVQKAVIPVALT--GEDIVAKSQTGSGKTAAFAIPIAEQVEWE----ENKPQALIIVPTRELAMQVKTECTNIGRFK----RVKAAAIYGQSPFAKQKLE-LSQKNHIVVGTPGRLLDHIEKG-SLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPK-------QRQNLFFSATMPEEMQDLIKRYQDNPMVIEMASE------KTNPIFHV--EM-QTDNKEKT----LKDVLI-TENPDSAIIFCNTKNQVDELTDLLD------VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVTIEKKRKPTVIEVKVNEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRAVDFVGTISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARKR |
3SQW Chain:A ((25-408)) | --EGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED--------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SQW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141307 for 2889 contacts (-48.9/contact) +
2D Compatibility (PS) -37351 + (NN) -14006 + (LL) 9468
1D Compatibility (HY) -25600 + (ID) 5550
Total energy: -214346.0 ( -74.19 by residue)
QMean score : 0.457
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