Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERNEVLKKVEAAMPNARFKHTLGVEKAAVELAEHYHMDVEKARITALLHDYAKYYDDDKARKIIEDEGYDPRLLSFHHSLWHAPVGAYLAEKE---------FGITDTEILEAIRLHTTGSATMSDFDKLIYLADYTEQGRTFPGVYKARRLALKSLDEAMLFALSNTITHLVKKQQLVFPDTLDAYNYFVNLNLEGDY
2DQB Chain:A ((73-201))
--------------YRTRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLGHPPFGHTGEHVLN------ALMQDHGGFEHNAQALRILTHLEVRYPGFRGLNLT-YEVLEGIATHEA--GQGTLEAQVVDLSDAIAYA-----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2DQB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31144 for 809 contacts (-38.5/contact) +
2D Compatibility (PS) -11828 + (NN) -4443 + (LL) 5688
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -45577.0 ( -56.34 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_2DQB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DQB-query.scw
PDB file :
Tito_Scwrl_2DQB.pdb
: