Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRRLDRFNAPDDTVNTLFQVYKTISFWKVLKNTLVIEFGRFFPWMGGKRKIYRVCLGMEIGEKTAIAYKVMPDLFFPEKILIGENSIIGYHTTILTHEYLLSEYRVG---EVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKEKATLT
3GVD Chain:J ((141-243))
-----------------------------------------------------VAFGVDIHPAATIGCGIMLD--HATGIVIGETAVVENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQSVPAHTTAAGVP----------
General information:
TITO was launched using:
RESULT:
Template:
3GVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92722 for 752 contacts (-123.3/contact) +
2D Compatibility (PS) -11180 + (NN) -4434 + (LL) 5508
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -109328.0 ( -145.38 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_3GVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GVD-query.scw
PDB file :
Tito_Scwrl_3GVD.pdb
: