Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVPAKKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPTWDEAHGPVEQRSERQLTELVSLQSQHPDFLRLFYLLSMERSQDPAVAAVVRRVRNTAIARFRDSITHLLPSDIPPGKADLVVAELTAFAVALSDGVYFAGHLEPDTTDVERMYRRLRQALEALIPVLLEET-
3FRQ Chain:A ((6-190))
-----------KLKSDDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMERGVEQVRHYLNAIPIGAG--PQGLWEFLQVLVRSMNTRNDFSVNYLISWYELQV-----PELRTLAIQRNRAVVEGIRKRLPPGAPAA--------AELLLHSVIAGATMQWAVDPDGELADHVLAQIAAILCLMFPEHDDFQL
General information:
TITO was launched using:
RESULT:
Template:
3FRQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62340 for 1320 contacts (-47.2/contact) +
2D Compatibility (PS) -20067 + (NN) -11402 + (LL) 2040
1D Compatibility (HY) -8800 + (ID) 1600
Total energy: -102169.0 ( -77.40 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_3FRQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FRQ-query.scw
PDB file :
Tito_Scwrl_3FRQ.pdb
: