Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDRIVMEVSRYRPEIESAPTFQAYEVPLTREWAVLDGLTYIKDHLDGTLSFRWSCRMGICGSSGMTINGDPKLACATFLADYLPGPVRVEPMRNFPVIRDLVVDISDFMAKLPSVKPWLVRHDEPPVEDGEYRQTPAELDAFKQFSMCINCMLCYSACPVYALDPDFLGPAAIALGQRYNLDSRDQGAADRRDVLAAADGAWACTLVGECSTACPKGVDPAGAIQRYKLTAATHALKKLLFPWGGG
1KF6 Chain:B ((2-237))
EMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYT-DGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRT-ADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLI---------
General information:
TITO was launched using:
RESULT:
Template:
1KF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127559 for 1904 contacts (-67.0/contact) +
2D Compatibility (PS) -24107 + (NN) -4126 + (LL) -232
1D Compatibility (HY) -23600 + (ID) 5900
Total energy: -185524.0 ( -97.44 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1KF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KF6-query.scw
PDB file :
Tito_Scwrl_1KF6.pdb
: