Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKLQLRAVVADRRLDVEFSVSAGEVLAVLGPNGAGKSTALHVIAGLLRPDAGLVRLGDRVLTDTEAGVNVATHDRRVGLLLQDPLLFPHLSVAKNVAFGPQCRRGMFGSGRARTRASALRWLREVNAEQFADRKPRQLSGGQAQRVAIARALAAEPDVLLLDEPLTGLDVAAAAGIRSVLRSVVARSGCAVVLTTHDLLDVFTLADRVLVLESGTIAEIGPVADVLTAPRSRFGARIAGV---NLVNGTIGPDG-SLR-T-QSGAHWYGTPVQDLPTGHEAIAVFPPTAVAVYPEPPHGSPRNIVGLTVAEVDTRGPTVLVRGHDQPGGAPGLAACITVDAATELRVAPGSRVWFSVKAQEVALHPAPHQHASS |
| 2YYZ Chain:A ((13-355)) | -------FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVND------IPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR----ISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENKQTILKRDDVIIKLPE-PVDVKLKEVVVGIRPEHCRISRER----VENSIPGVVYVVEPLGRDIIVNVKTE--KGEIIKVFG----DTGKAPQPGENVFLVPDLRKIHLFNPETE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YYZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182858 for 2544 contacts (-71.9/contact) +
2D Compatibility (PS) -36592 + (NN) -18164 + (LL) 1080
1D Compatibility (HY) -19600 + (ID) 4650
Total energy: -260784.0 ( -102.51 by residue)
QMean score : 0.424
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