Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLRLVSPIKAFADGIVAVAIAVVLMFGLANTPRAVAADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA--NPAVTFVGIAT-RADVGAMQSFVSKYNL-NFTNLNDADGVIWARY----NVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALTS
1JFU Chain:A ((5-180))
TGDPACRAAVATAQKIAPLAHGEVAALTMASAPLKLP-----DLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG
General information:
TITO was launched using:
RESULT:
Template:
1JFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136979 for 1361 contacts (-100.6/contact) +
2D Compatibility (PS) -17568 + (NN) -3087 + (LL) 448
1D Compatibility (HY) -4000 + (ID) 1650
Total energy: -162836.0 ( -119.64 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_1JFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JFU-query.scw
PDB file :
Tito_Scwrl_1JFU.pdb
: