Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTNPPWTVDVVVVGAGFAGLAAARELTRQGHEVLVFEGRDRVGGRSLTGRV--AGVPADMGGSFIGPTQDAVLALATELGIPTTPTHRDGRNVIQWRGSARSYRG-TIPKLSLTGLIDIGRLRWQFERIARGVPVAAPWDARRARELDDVSLGEWLRLVRATSSSRNLMAIMTRVTWGCEPDDVSMLHAARYVRAAGGLDRLLDVKNGAQQDRVPGGTQQIAQAAAAQLG-ARVLLNAAVRRIDRHGAGVTVTSDQGQAEAGFVIVAIPPAHRVAIEFDPPLPPEYQQLAHHWPQGRLSKAYAAYSTPFWRASGYSGQALSDEAPVFITFDVSPHADGPGILMGFVDA---RGFDSLPIEERRRDALRCFASLFGDEALDPLDYVDYRWGTEEFAPGGPTAAVPPGSWTKYGHWLREPVGPIHWASTETADEWTGYFDGAVRSGQRAAAEVAALL |
4I59 Chain:A ((13-461)) | -----PDVDVIIIGAGISGSAAAKALHDQGASVLVVEANDRIGGRTWTEQEGAPGGPIDYGGMFIGETHTHLIELGTSLGLEMTPSGKPGDDTYIVAGNVLRAPDDQLDP-NLPFVPEFLSSLKALDELADSVGWDQPWASPNAAALDSKTVATWLAETIESEEVRRLHTVIVNTLLGADPYEVSLLYWAYYVSECEGIQSLMGTRDGAQWAWWFGGAAQVSWRIADAIGRDKFLLEWPVDRIEHDESGVTLFSGQRSLRARHIVIAMSPLAANQIRFEPALPTSRAQLQARAPMGRYYKVQARYPSSFWVEQGYSGALLDTEDVGVFLLDGTKPTDTLATLIGFIGGSNYDRWAAHTPQERERAFLDLLVKAFGPQAADPSYFHETDWTQQEWAKGGPVTYMPPGVLANFGAALRDPVGKVHFAGTEASFQWSGYMEGGVRAGQKAAAAIAEEL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4I59.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -213843 for 4169 contacts (-51.3/contact) +
2D Compatibility (PS) -48037 + (NN) -29667 + (LL) 76
1D Compatibility (HY) -26800 + (ID) 7500
Total energy: -325771.0 ( -78.14 by residue)
QMean score : 0.535
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