Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNVMLITGASRGIGAATALLAAERGYAVVLNYLRNREAAEALRQRIE-RQGGEALAVAADVAEEGDVERLFASIDERFGRLDVLVNNAGMLEAQ--TRLENIDAARLHRVFATNVTGSFLCAREAVKRLSTRHGGRGGSIVNVSSMASRLGSPNEYIDYAAAKGAIDSMTIGLAREVAAEGIRVNAVRPGLIDTEIHASGGE-PGRIERLKGGIPLGRGGTAEEVARAILWLASDEASYSTGTFIDVSGGR
2CFC Chain:A ((1-247))
MSRVAIVTGASSGNGLAIATRFLARGDRVAAL-DLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQ---GAGVIVNIASVASLVAFPGR-SAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAY
General information:
TITO was launched using:
RESULT:
Template:
2CFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114452 for 2118 contacts (-54.0/contact) +
2D Compatibility (PS) -26246 + (NN) -9962 + (LL) -116
1D Compatibility (HY) -12400 + (ID) 4300
Total energy: -167476.0 ( -79.07 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_2CFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CFC-query.scw
PDB file :
Tito_Scwrl_2CFC.pdb
: