Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFERPILITGGAGFIGSHLTDALLARGYRVRVLDNLSTGKRDNLPLDDERVELLEGDAADAATLAAALKGCAAVAHLAAVASVQASVDDPVATHQSNFIATLNLCEAMREQGVKRVVFASSAAVYGQNGEGTAIDEDTPKSPLTPYASDKLASEYYLDFYRRQHGLEPAIFRFFNVYGPRQDPSSPYSGVISIFTERALKG-TPITVFGDGEQTRDFIYVADLVDFLVQALEAT---AVEPGAVNVGLNRSISLKQLLAEIGQVLGGLPPVTHADARAGDIRHSRANNERLLRRFRFDQPTPMGVGLARLLGR |
3KO8 Chain:A ((1-304)) | ---MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV---NPSAELHVRDLKDYSWGA--GIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVI-PTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH-----GVIYDFIMKLRRNPNVLEVL----QRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLV----GDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KO8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168198 for 2576 contacts (-65.3/contact) +
2D Compatibility (PS) -30673 + (NN) -9292 + (LL) 708
1D Compatibility (HY) -16400 + (ID) 4550
Total energy: -228405.0 ( -88.67 by residue)
QMean score : 0.583
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