Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLIVHAHNEPQSFTRALCDQACETLAGQGHAVQVSDLYAMNWNPVASAADFAERAD-PDYLVYALEQRESVKRQSLAADIQAELDKLLWADLLILNFPIYWFSVPAILKGWFDRVLVSGVCYGGKRFYDQGGLAGKKALVSLTLGGRQHMFGEGAIHGPLEDMLRPILRGTLAYVGMQVLEPFVAWHVPYISEEARGNFLRAYRARLENLEQDVPLRFPRLEQFDALLQPLAR
1D4A Chain:A ((3-229))
RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFD--------
General information:
TITO was launched using:
RESULT:
Template:
1D4A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175180 for 1723 contacts (-101.7/contact) +
2D Compatibility (PS) -23942 + (NN) -9296 + (LL) 896
1D Compatibility (HY) -18800 + (ID) 4600
Total energy: -230922.0 ( -134.02 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1D4A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D4A-query.scw
PDB file :
Tito_Scwrl_1D4A.pdb
: