Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVNLILVGPMGAGKSTIGRLLAKELHLAFKDSDKEIEQRCGANIPWIFDVEGEVGFREREQAMLTELCAADGMVIATGGGAVMRDGNRQVLRAGGRVVYLHASVEHQIARTARDR--NRPLLQKPNPGQILRDLMALRDPLYREIADVVVETDERPPRLVVQEILERLRKLPPR
3TRF Chain:A ((5-174))
LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIKQ----
General information:
TITO was launched using:
RESULT:
Template:
3TRF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72910 for 1282 contacts (-56.9/contact) +
2D Compatibility (PS) -18121 + (NN) -2015 + (LL) -4
1D Compatibility (HY) -14400 + (ID) 3750
Total energy: -111200.0 ( -86.74 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_3TRF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TRF-query.scw
PDB file :
Tito_Scwrl_3TRF.pdb
: