Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIFAVGDVHGEITLLDELLENWD-KERERLLFVGDLIDRGENPAAVLRRVKALADQTGAIVLKGNHEQMLLDFLENPSGKMHYYLSQGGMETIQSLIADSLDKKMTPEGLAKRVKEEASELIDFIRKLPLYYEEGKYVFVHAGVDLTKKDWHDTEERDFFWIREPFLFGQNKTGKVFIFGHTPVQNLHIDESSGIWVSEDKTRLDIDGGAVFGG-----ELHGVVVEEKVITKSFSVKK
1S3L Chain:A ((26-185))
-MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLF-----VIKEFENLN--ANIIATYGNNDGERCKLK-------EW-LK--------DINEE-------------------NIIDDFISV---EIDDLKFFITHGHHQSVLE----------MAIK----S---GLYDVVIYGHTHERVF---------E-EVDDVLVINPGECCGYLTGIPTIGILDTEKKEY--------
General information:
TITO was launched using:
RESULT:
Template:
1S3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123715 for 1270 contacts (-97.4/contact) +
2D Compatibility (PS) -16074 + (NN) -1233 + (LL) 3988
1D Compatibility (HY) -7600 + (ID) 1550
Total energy: -146184.0 ( -115.11 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1S3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S3L-query.scw
PDB file :
Tito_Scwrl_1S3L.pdb
: