Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKEIRNLKIASVLRRAISKVLMEGKVFNK---NVVISDVKLSGDLKKADVYIVLSSLSKKKYNINTVVDEINQSAWLIRKSILSYVDLRFIPKLVFKADLAFDNFVNISKILSNYT
1PA4 Chain:A ((6-101))
------KERLENDIIRLINRTVIHE-IYNETVKTGHVTHVKLSDDLLHVTVYLDCYN----REQIDRVVGAFNQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNAM----------
General information:
TITO was launched using:
RESULT:
Template:
1PA4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56786 for 609 contacts (-93.2/contact) +
2D Compatibility (PS) -9407 + (NN) 4035 + (LL) 1696
1D Compatibility (HY) -5200 + (ID) 1100
Total energy: -66762.0 ( -109.63 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_1PA4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PA4-query.scw
PDB file :
Tito_Scwrl_1PA4.pdb
: