Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFITVTLALGMIATTGATVTSNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPE-----KIRNAKSAVYTITWKDGSKKEVDLKKD-----------SYTANLFDSNSIKQIDINVKTK
1DYQ Chain:A ((123-234))
--------------------------------------------EKKVPINLWLDGKQNTVPLETVKTNKKNVTVQELDLQARRYLQEKYNLYNSDVFDGK---VQRGLIVFHTSTEPSVNYDLFGAQGQYSNTLLRIYRDNKTINSENM-HIDIYLYTS
General information:
TITO was launched using:
RESULT:
Template:
1DYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15962 for 646 contacts (-24.7/contact) +
2D Compatibility (PS) -10308 + (NN) -3794 + (LL) 3988
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -29626.0 ( -45.86 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_1DYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DYQ-query.scw
PDB file :
Tito_Scwrl_1DYQ.pdb
: