Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVLTDKIAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQLA-QDSVKVVPTDVTNKEEVDELMKIAQQTFGGLDIVINSAGQMLSS--KITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKS-STIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAITAAY-N--P-----------S-DRKKLDPQDIAEAVLYALTQPKHVNVNEITVRPV
2BGK Chain:A ((11-248))
TNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAYLAGDES------------
General information:
TITO was launched using:
RESULT:
Template:
2BGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111939 for 1809 contacts (-61.9/contact) +
2D Compatibility (PS) -23550 + (NN) -3656 + (LL) 972
1D Compatibility (HY) -16400 + (ID) 3500
Total energy: -158073.0 ( -87.38 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_2BGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BGK-query.scw
PDB file :
Tito_Scwrl_2BGK.pdb
: