Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKIGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRDRIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLLVINKIDLAPYVGADLKVMERDSKKMRGEKPFIFTNIRAKEGLDDVIAWIKRNALLED
2HF9 Chain:A ((38-225))
VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHG----AKVVPLNTGKECHLD--AHL-V-GHALEDL-N-LDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK
General information:
TITO was launched using:
RESULT:
Template:
2HF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73584 for 1624 contacts (-45.3/contact) +
2D Compatibility (PS) -20645 + (NN) -11951 + (LL) 700
1D Compatibility (HY) -16400 + (ID) 3100
Total energy: -124980.0 ( -76.96 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_2HF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HF9-query.scw
PDB file :
Tito_Scwrl_2HF9.pdb
: