Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNA----FLHFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLE-----NIDLNYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQIL--------NQKTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL |
| 1YYA Chain:A ((2-249)) | RRVLVAGNWKMHKTPSEARVWFAELKRLLP-PLQSEAAVLPAFPILPVAKEVLAETQVGYGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEA--VPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELESFLALLRIA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YYA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129209 for 1970 contacts (-65.6/contact) +
2D Compatibility (PS) -24497 + (NN) -7995 + (LL) 196
1D Compatibility (HY) -9200 + (ID) 3750
Total energy: -174455.0 ( -88.56 by residue)
QMean score : 0.532
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