Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKSFKNVECVAFEGLLADLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPFISKV
1QJC Chain:A ((2-155))
--KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAK
General information:
TITO was launched using:
RESULT:
Template:
1QJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118189 for 1209 contacts (-97.8/contact) +
2D Compatibility (PS) -16275 + (NN) -2339 + (LL) 328
1D Compatibility (HY) -15600 + (ID) 3600
Total energy: -155675.0 ( -128.76 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_1QJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QJC-query.scw
PDB file :
Tito_Scwrl_1QJC.pdb
: