Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIVFFDVDGTLVGET-KEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRK--ELD-INSYICYNGQYVIFEGKEIYAKPLPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTIGMNSIKR--EYPKVDANYYKGRDIYQCLLFCDESY-DAYYREEFKQYGFLRWHDVS-VDVCPADGSKAEGIKQMIKKLGFSMKDTYAFGDGLNDIAMLQTVGTGVAMGNGRDEVKAVADYVTSHVDDDGVYNALKQLKLI
2RBK Chain:A ((1-261))
MTKALFFDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLIDGYITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPN-EMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKE-VLPSIPTCEIG-RWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISKAMKHFGII
General information:
TITO was launched using:
RESULT:
Template:
2RBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144891 for 2252 contacts (-64.3/contact) +
2D Compatibility (PS) -27841 + (NN) -15982 + (LL) 236
1D Compatibility (HY) -18800 + (ID) 3750
Total energy: -211028.0 ( -93.71 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_2RBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RBK-query.scw
PDB file :
Tito_Scwrl_2RBK.pdb
: