Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYVEMKDVSKYYQMGENVVTANDKITFGIKKGEFVVIVGPSGAGKSTVLNILGGMDSASEGKIMVDGQDIAQYNAKQLTKYRRTDVGFVFQFYNLVPNLTAKENVELAAQIAP-----NALDAETVLTQVGLSHRLDNFPAQLSGGEQQRVAIARALAKAPKLLLCDEPTGALDYDTGKSVLKLLQETCRNTGTTVIVITHNTA-ITPIADRIIEINNAKVRSIKENPEPMSIDDLEW
1OXX Chain:K ((1-232))
MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV-PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP----
General information:
TITO was launched using:
RESULT:
Template:
1OXX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111414 for 1847 contacts (-60.3/contact) +
2D Compatibility (PS) -24348 + (NN) -9210 + (LL) 436
1D Compatibility (HY) -17200 + (ID) 4100
Total energy: -165836.0 ( -89.79 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_1OXX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXX-query.scw
PDB file :
Tito_Scwrl_1OXX.pdb
: