Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LNVRANRVSEQMKKELGDILNRKIKDPRLGFVTVTGVDVTGDLQEAKVFISILGTDKE--KENTLLALAKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYGNRIDELLRDLNNDQ
1JOS Chain:A ((7-106))
---RSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGM-------------
General information:
TITO was launched using:
RESULT:
Template:
1JOS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46658 for 661 contacts (-70.6/contact) +
2D Compatibility (PS) -10646 + (NN) -6509 + (LL) 1056
1D Compatibility (HY) -11200 + (ID) 2150
Total energy: -76107.0 ( -115.14 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_1JOS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOS-query.scw
PDB file :
Tito_Scwrl_1JOS.pdb
: