Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVALVTGSSRGLGREIAIALAKEGYDIAVNFSRNRKKAEEVQQEIE-QLGRKCVIFKANVGDVEKVRELFKAVDEEFGRLDIFINNAASGVL---RPLMELEESHWDWTMNINAKALLFAGQEAAKLMQRHQSGKIISLSSIGSIRYLENYTTVGVSKAAVESLTRYLAVELAPFGIAVNAVSGGLIETDALNHFPNREELLKDAVSKTPAGRMIEPNDLVNAVLFLASEKADMIRGQTILVDGGRTLLV
2CFC Chain:A ((1-249))
MSRVAIVTGASSGNGLAIATRFLARGDRVAALDL-SAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAYTA--
General information:
TITO was launched using:
RESULT:
Template:
2CFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129915 for 2140 contacts (-60.7/contact) +
2D Compatibility (PS) -26590 + (NN) -11727 + (LL) 468
1D Compatibility (HY) -11600 + (ID) 3450
Total energy: -182814.0 ( -85.43 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_2CFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CFC-query.scw
PDB file :
Tito_Scwrl_2CFC.pdb
: