Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRIGQGFDVHQLVE----GRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG
4C81 Chain:A ((7-182))
GIRIGQGYDIHKIKVLDEE-KTLTLGGVKIN-NVLVLSHSDGDIIYHSIVDSILGALGSLDIGTLFP--------KNSAIFLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNIDESQISVKGKTHEKLGVIGEKKAIECFANILLIPK
General information:
TITO was launched using:
RESULT:
Template:
4C81.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106123 for 1193 contacts (-89.0/contact) +
2D Compatibility (PS) -16079 + (NN) -7729 + (LL) -96
1D Compatibility (HY) -13200 + (ID) 2800
Total energy: -146027.0 ( -122.40 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_4C81.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C81-query.scw
PDB file :
Tito_Scwrl_4C81.pdb
: