Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP----------------------------GYKFADEFHPELQFDKPYLLAMANAG-PGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTAT---DGNDRPTDPVVIESITIS
4R3F Chain:A ((9-198))
-------NLEPQPTGAVIIHTTQGDLKVELFAKQTPLTCRNFLQHSL---------------DGYYDGTIFHRLVPGFIIQGGDPTGTGHGGESIYDGGAFSGDLDPWPMDQRKGHNAGPMGVNFKDEFHSRLKFNRRGLLGMANEGAPDTNGSQFFFTLGKAEELNNKNTLFGRVAA--GDTIYNLMKWGEAELIEGTERPQYPVKITNIEIL
General information:
TITO was launched using:
RESULT:
Template:
4R3F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69340 for 1252 contacts (-55.4/contact) +
2D Compatibility (PS) -17064 + (NN) -11267 + (LL) 296
1D Compatibility (HY) -14000 + (ID) 3600
Total energy: -114975.0 ( -91.83 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_4R3F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R3F-query.scw
PDB file :
Tito_Scwrl_4R3F.pdb
: