Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVPAKKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPTWDEAHGPVEQRSERQLTELVSLQSQHPDFLRLFYLLSMERSQDPAVAAVVRRVRNTAIARFRDSITHLLPS-DIPPGKADLVVAELTAFAVALSDGVYFAGHLEPDTTDVERMYRRLRQALEALIPVLLEET
1JT6 Chain:A ((2-187))
-------------NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTEYYYP-LQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVT--------FTHEQNINERIKLMNKFSQIFLNGLS---
General information:
TITO was launched using:
RESULT:
Template:
1JT6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79934 for 1319 contacts (-60.6/contact) +
2D Compatibility (PS) -20701 + (NN) -15007 + (LL) 1336
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -119656.0 ( -90.72 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_1JT6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JT6-query.scw
PDB file :
Tito_Scwrl_1JT6.pdb
: