Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAAGGPLP
4MVA Chain:A ((25-276))
-MRHPLVMGNWKLNGSRHMVHELVSNLRKELA--GVAGCAVAIAPPEMYIDMAKREAE--GSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKV-DANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAA---
General information:
TITO was launched using:
RESULT:
Template:
4MVA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184644 for 2198 contacts (-84.0/contact) +
2D Compatibility (PS) -28609 + (NN) -21035 + (LL) -12
1D Compatibility (HY) -12800 + (ID) 5200
Total energy: -252300.0 ( -114.79 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_4MVA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MVA-query.scw
PDB file :
Tito_Scwrl_4MVA.pdb
: