Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEMALAQQVPNLGLARFSVQDKSILITGATGSLGRVAARALADAGARLTLAGGNSAGLAELVNG----AGIDDAAVVTCRPDSLADAQQMVEAALGRYGRLDGVLVASGSNHV---APITEMAVEDFDAVMDANVRGAWLVCRAAGRVLLEQGQGGSVVLVSSVRGGLGNAAGYSAYCPSKAGTDLLAKTLAAEWGGHGIRVNALAPTVFRSAVTEWMFTDDPKGRATREAMLARIPLRRFAEPEDFVGALIYLLSDASSFYTGQVMYLDGGYTAC
2CFC Chain:A ((2-249))
---------------------SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYAD-KVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIASVASLVA-FPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQ-P---ELRDQVLARIPQKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAYTA-
General information:
TITO was launched using:
RESULT:
Template:
2CFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184838 for 2093 contacts (-88.3/contact) +
2D Compatibility (PS) -26614 + (NN) -11425 + (LL) 2076
1D Compatibility (HY) -12000 + (ID) 3450
Total energy: -236251.0 ( -112.88 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_2CFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CFC-query.scw
PDB file :
Tito_Scwrl_2CFC.pdb
: