Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQATCARIARRFVWRNRMPRRLFIGLFLLPLPLFAAPPKDELAYAVGARLGMRLQQEMPGLELSELLLGLRQAYRGEALEIPPERIEQLLLQHENATTE---------TPRTTPAEARFLANEKARFGVRELTGGVLVSELRRGQGNGIGAATQVHVRYRGLLADGQVFDQSES---AEWFALDSVIEGWRTALRAMPVGARWRVVIPSAQAYGHEGAGDLIPPDAPLVFEIDLLGFR
1FD9 Chain:A ((9-210))
-------------------------------------TDKDKLSYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK
General information:
TITO was launched using:
RESULT:
Template:
1FD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80218 for 1268 contacts (-63.3/contact) +
2D Compatibility (PS) -20734 + (NN) -10094 + (LL) 3908
1D Compatibility (HY) -13600 + (ID) 2850
Total energy: -123588.0 ( -97.47 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1FD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FD9-query.scw
PDB file :
Tito_Scwrl_1FD9.pdb
: