Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIFFIDNFDSFSYNLVYELECLGYEVAVYQNDIDPSYLMGLMNEEPKTPLLFISPGPGNPNSSGNLLKIIA-M-AKKKFPILGVCLGLQALAQSYGAKIIRSKEIVHGKATTIAL-KKHAVFKGLGESMVVGRYHSLMASGLPKNLEVIAEHDNIPMAIVNEEDKILAYQFHPESIMTLQGRALLEQSVGFLRELS
2VXO Chain:A ((31-212))
-AVVILDAG--YGKVIDRRVRELFVQSEIFPLETPAFAIK-----EQGFRAIIISGGP---------APWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHK-------V-FNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARSGNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCS
General information:
TITO was launched using:
RESULT:
Template:
2VXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129629 for 1349 contacts (-96.1/contact) +
2D Compatibility (PS) -17276 + (NN) -5317 + (LL) 288
1D Compatibility (HY) -9200 + (ID) 1850
Total energy: -162984.0 ( -120.82 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_2VXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VXO-query.scw
PDB file :
Tito_Scwrl_2VXO.pdb
: