Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNPTFGEKIDNVDYRSRFGVYAIIPNPTHDKIILVQAPN-GAWFLPGGEIEENENHLEALTRELIEELGYSATIGHYYGQADEYFYSRHRDTYYYNPAYIYEVTAYHKEQAPLEDFNHLAWFPIQEAKEKLKRGSHRWGVQAWEKNHHSRK
3FK9 Chain:A ((1-128))
----------------LQRVTNCIVVDH--DQVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEG-KIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMAAGDKWIFKHVLHSDRLLY
General information:
TITO was launched using:
RESULT:
Template:
3FK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41366 for 903 contacts (-45.8/contact) +
2D Compatibility (PS) -13322 + (NN) -1956 + (LL) 772
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -60822.0 ( -67.36 by residue)
QMean score : 0.229
(partial model without unconserved sides chains):
PDB file :
Tito_3FK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FK9-query.scw
PDB file :
Tito_Scwrl_3FK9.pdb
: