Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLSDARSISYMSDIISIASDHAGYELKSEIKSYLETLGCKVLDRGCTAEQKCVDYPDYAVKIAEDIINKKADYGILICGTGLGMSIVANRFKGIHAVLCNSVEITKLAREHGNANVLCLGARFTASGLAKDIVKQFLETEFSKESRHKRRLDKLSNIASFSKRKKVQTYNEDEVSKFAKMVGEWWDENGKFKPLHMMNPVRVSYIIEKIKELKKCDLKKLSLLDVGCGGGILSESIARVGINVLGIDVCEENIKVAQSHAKKVGLNIEYTHTSIEELSNNQKYDVVLLMEVVEHVDNLELFIKKAIELLKPEGLIFISTINRTFKSFFLAIIGAEYILNWLPKGTHNWNKFLKPSEIANHLREGNVTLQDMAGMEYNIIKSEWNLTKGVDVNYILCGVMNS |
2VVR Chain:A ((1-146)) | ------------MKKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWS-SERTDYPHYASQVALAVAGGEVDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAKMIVDAWLGAQYEG-GRHQQRVEAITAIEQR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VVR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -111698 for 1212 contacts (-92.2/contact) +
2D Compatibility (PS) -15814 + (NN) -5814 + (LL) 19060
1D Compatibility (HY) -10400 + (ID) 2800
Total energy: -127466.0 ( -105.17 by residue)
QMean score : 0.604
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