Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIITIFGPPGSGKGTQSSLLIERYNLKLISVGDLLRNIISSGSELGKKIKDTVESGNLIQDGVICELLYDQLALM-DDNFLFDGFPRNLNQAHFLTQILRERYNRDVDIVIELQLNDKVAIDRLKNRLVCLDCKSVYSTSSFKDDNNLVCTRCKSARLEKRIDDSDLSAIDRRIGEYHVQVKSLREYYRD-K-LLMIDANLNVDQVKQEIESKISCSLV
1QF9 Chain:A ((7-192))
NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKD-F-VDTKFVLFFDCPEEVMTQRLLKRGESS--G--------------------------RSDD-NIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKSMGF
General information:
TITO was launched using:
RESULT:
Template:
1QF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89461 for 1434 contacts (-62.4/contact) +
2D Compatibility (PS) -19726 + (NN) -6492 + (LL) 1336
1D Compatibility (HY) -8800 + (ID) 2700
Total energy: -125843.0 ( -87.76 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_1QF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QF9-query.scw
PDB file :
Tito_Scwrl_1QF9.pdb
: