Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHT-----NKGDMTFKLFPNIAPKTVENFVTHAKNGY--------YDGITFHRVINDFMIQGGDPT-ATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
1MZW Chain:A ((7-177))
-----------SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCD----------------------------WLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM-
General information:
TITO was launched using:
RESULT:
Template:
1MZW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58012 for 1250 contacts (-46.4/contact) +
2D Compatibility (PS) -16549 + (NN) -5837 + (LL) 1296
1D Compatibility (HY) -8400 + (ID) 3700
Total energy: -91202.0 ( -72.96 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_1MZW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MZW-query.scw
PDB file :
Tito_Scwrl_1MZW.pdb
: