Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
3GED Chain:A ((2-230))
---NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKR-SADF----AKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIK-NKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-DVLVNCIAPGWINVT---EFTQE----DCAAIPAGKVGTPKDISNMVLFLCQQ--DFITGETIIVDGGMS-
General information:
TITO was launched using:
RESULT:
Template:
3GED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97059 for 1914 contacts (-50.7/contact) +
2D Compatibility (PS) -24205 + (NN) -4840 + (LL) 2432
1D Compatibility (HY) -16800 + (ID) 3350
Total energy: -143822.0 ( -75.14 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3GED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GED-query.scw
PDB file :
Tito_Scwrl_3GED.pdb
: